Gilbert S. Omenn

Principal investigator

Gilbert S. Omenn

Harold T. Shapiro Distinguished University Professor of the Gilbert S. Omenn Department of Computational Medicine and Bioinformatics, Internal Medicine, Human Genetics, and Public Health

Principal Investigator

Research

Research areas

  • Proteomics
  • Cancer biomarkers
  • Pharmacogenomics

Training

Education

  • Ph.D.Genetics, University of Washington
  • M.D.Harvard Medical School
  • B.A.Princeton University

Background

Gilbert S. Omenn leads the global Human Proteome Project of the Human Proteome Organization, and his current research is focused on the proteogenomics of alternative splicing in cancers, where splice isoforms are candidates for more specific biomarkers and therapeutic targets. He is also a co-founder of the Consortium for Clinical Characterization of COVID-19 by EHR, and his longer-standing interests include the genetics of susceptibility to environmental and occupational exposures.

He served as Executive Vice President for Medical Affairs and Chief Executive Officer of the University of Michigan Health System from 1997 to 2002, and was Dean of the School of Public Health and Professor of Medicine and Environmental Health at the University of Washington from 1982 to 1997. He is a past president of the American Association for the Advancement of Science, a member of the U.S. National Academy of Medicine, a board member of the Weizmann Institute of Science in Israel, honorary faculty of Peking Union Medical College, and affiliate faculty of the Institute for Systems Biology in Seattle. He served as a White House Fellow at the U.S. Atomic Energy Commission and as associate director of both the White House Office of Science and Technology Policy and the Office of Management and Budget.

His Google Scholar profile lists 1,015 publications spanning 1960 to 2026, with 63,041 citations, an h-index of 109, and an i10-index of 453; his U-M faculty profile states 700 publications. That work includes the CARET beta-carotene and retinol lung cancer prevention trial, the plasma homocysteine cardiovascular risk assessment, the HUPO Plasma Proteome Project, ProteomeXchange, and the CPTAC proteogenomic characterizations of lung adenocarcinoma, clear cell renal cell carcinoma, and glioblastoma.

With this lab he co-conceived and co-supervised the study of nanopore read-termination signals, and he has co-authored twelve publications with the PI between 2009 and 2026 spanning proteomics, cancer biomarkers, and pharmacogenomics.

Athey Lab publications

12 publications
Zheng J, Lin AY, Huffman A, Masci AM, Racz R, Wu G, Roan K, Ong E, Sarntivijai S, Hu J, Asfaw E, Kahn H,
and 49 more authors, including Athey BD and Omenn GS(show fewer authors)Li X, Zhang X, Monickaraj J, Kosar N, Li J, Manuel W, Abeysinghe R, Rehana H, Bansal B, Pan Y, Guo J, He V, Song J, Seleznev AI, Hur K, He A, Davydov A, Yang Q, Ostropolets A, Vita R, Peters B, Ruttenberg A, Diehl AD, Hoyt CT, Roncaglia P, Huntley RP, Scheuermann RH, Courtot M, Todd T, Sayers S, Chen F, Li X, Yeh FY, Xiang Z, Ozgur A, Whetzel PL, Musen MA, Mungall CJ, Leitner WW, Cui L, Colby LA, Mobley HLT, Athey BD, Omenn GS, Cowell LG, Tao C, Hur J, Smith B, He Y
Scientific Data202613(1):994
He Y, Yu H, Huffman A, Lin AY, Natale DA, Beverley J, Zheng L, Perl Y, Wang Z, Liu Y, Ong E, Wang Y,
and 31 more authors, including Omenn GS and Athey B(show fewer authors)Huang P, Tran L, Du J, Shah Z, Shah E, Desai R, Huang HH, Tian Y, Merrell E, Duncan WD, Arabandi S, Schriml LM, Zheng J, Masci AM, Wang L, Liu H, Smaili FZ, Hoehndorf R, Pendlington ZM, Roncaglia P, Ye X, Xie J, Tang YW, Yang X, Peng S, Zhang L, Chen L, Hur J, Omenn GS, Athey B, Smith B
Journal of Biomedical Semantics202213(1):25
He Y, Yu H, Ong E, Wang Y, Liu Y, Huffman A, Huang HH, Beverley J, Lin Y, Duncan WD, Arabandi S, Xie J,
and 6 more authors, including Omenn GS and Athey BD(show fewer authors)Hur J, Yang X, Chen L, Omenn GS, Athey BD, Smith B
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS), CEUR Workshop Proceedings20202807:1-10

VO Modeling and Comparison of Vaccines

Conference Unverified metadata
Cowell L, Diehl AD, Mobley HLT, Peters B, Ruttenberg A, Scheuermann RH, Brinkman RR, Courtot M, Mungall C, Xiang Z, Todd T, Colby LA,
and 6 more authors, including Athey BD and Omenn GS(show fewer authors)Rush HG, Whetzel T, Musen MA, Athey BD, Omenn GS, Smith B
2009